MCBIOS 2010

CONFERENCE PROGRAM

Friday, February 19, 2010
	8:00 AM				Registration Desk Opens Student Union Centennial Hall
	8:50 AM	-	9:55 AM		General Session
	8:50 AM	-	9:00 AM		Introduction   Dan Howard, Ph.D. Provost of the Arkansas State University
	9:00 AM	-	9:55 AM		Keynote   Clayton Naeve, Ph.D. Next Generation Sequencing Laboratories and their IT Requirements
	10:00 AM	-	11:55 AM		Parallel Sessions
					Track 1 St. Francis River Room	Track 2 Centennial Hall	Track 3 Cache River Room
	10:00 AM	-	10:45 AM		Keynote Workshop   Bioinformatics Requirements for Next Generation Sequencing Labs Dan McGoldrick, Ph.D.	Genomics   Session Chair Radhakrishnan Nagarajan, UAMS   Laura Kelly Vaughan and Tappan Mehta, EFFECT OF REFERENCE SELECTION ON ENRICHMENT ANALYSIS OF GENE LISTS   Zhining Wen and Leming Shi ASSESSING THE USABILITY OF GENE EXPRESSION DATA GENERATED FROM EXPIRED AFFYMETRIX GENECHIP MICROARRAYS WITH MAQC REFERENCE RNA SAMPLES   Natalia Vinas et al. DEVELOPMENT OF A DAPHNIA MAGNA BIOMONITORING PCR PANEL TO DETECT AND QUANTIFY EXPOSURE TO CHEMICALS	Algorithms for Genome Analysis   Session Chair Jim Fuscoe, NCTR   Yin Hu and Jinze Liu, DETECTING GENE FUSION WITH PAIRED-END READS*   Brandon Malone et al. ALGORITHMS FOR ANALYSIS OF ChIP-Seq DATA FOR CHARACTERIZATION OF HISTONE MODIFICATIONS IN RICE*   Yin Hu and Brandon Malone, PANEL ON ALGORITHMS FOR GENOME ANALYSIS: SPEAKERS ADDRESS AUDIENCE QUESTIONS ON BROADER IMPLICATIONS
	10:45 AM	-	11:00 AM			Break
	11:00 AM	-	11:30 AM		Keynote Workshop   Laboratory Requirements Caroline Obert, Ph.D	Proteins   Session Chair Youping Deng, SpecPro/US Army ERDC   Jake Chen et al. PEPPI: A PEPTIDOMICS DATABASE OF PROTEIN ISOFORMS IN HUMAN   Daniel Johnson et al. DETERMINATION OF FACTORS AFFECTING HIGH-LEVEL PROTEIN ACCUMULATION IN TRANSGENIC MAIZE SEED   Sushma Thotakura and Jerry Darsey, MODELING STUDIES OF GELDANAMYCIN AND SIMILAR COMPOUNDS TO TREAT PARKINSON'S DISEASE*   Lun Yang et al. MOLECULAR DOCKING SUPPORTS A DIRECT DRUG-HLA INTERACTION MECHANISM OF ABACAVIR- AND CARBAMAZEPINE-INDUCED SERIOUS ADVERSE DRUG REACTIONS	Visual information   Session Chair William Slikker, NCTR   Engin Mendi et al. SHOT BOUNDARY DETECTION AND KEY FRAME EXTRACTION FROM NEUROSURGICAL VIDEO SEQUENCES BASED ON COLOR INFORMATION*   Jinshan Tang, 3-D SPECKLE REDUCING BILATERAL FILTER FOR CATTLE FOLLICLE EXTRACTION
	11:30 AM	-	11:55 AM				Infrastructure   Session Chair William Slikker, NCTR   Daniel Quest et al. NEXT GENERATION MODELS FOR STORAGE AND REPRESENTATION OF BIOLOGICAL ANNOTATION   Roger Hall "CLOUD COMPUTING" IN BIOINFORMATICS
	12:00 PM	-	1:30 PM		Lunch and Business Meeting
	12:00 PM				Lunch begins
	12:30 PM	-	12:40 PM		Lunch continues	Announcements   Greg Monaco, Upcoming GPN meeting Eric Rouchka, Kentucky/Tennessee Bioinformatics Conference
	12:45 PM	-	Concluded			Business Meeting (All Members)   Daniel Berleant, MCBIOS President
	1:30 PM	-	5:30 PM		Parallel Sessions
					Track 1 St. Francis River Room	Track 2 Centennial Hall	Track 3 Cache River Room
	1:30 PM	-	2:25 PM		Evolution   Session Chair Doris Kupfer, FAA   Chao Di et al. COMPARATIVE GENOME ANALYSIS OF PHB GENE FAMILY   Ulrich Melcher, ASSESSING CONSTANCY OF SUBSTITUTION RATES OVER EVOLUTIONARY TIME   Heidi Pagan et al. LINEAGE SPECIFIC ACTIVITY FROM NOVEL PIGGYBAC ELEMENTS AND EVIDENCE OF HORIZONTAL TRANSFER IN MOUSE LEMURS (MICROCEBUS)   Chao Di, Ulrich Melcher, Heidi Pagan PANEL ON EVOLUTION: SPEAKERS ADDRESS AUDIENCE QUESTIONS ON BROADER IMPLICATIONS	Toxicity   Session Chair Susan Bridges, MSU   Youping Deng et al. NETWORK BASED CHEMICAL CLASSIFICATION AND NEW MODE OF ACTION IDENTIFICATION   Zhichao Liu et al. PREDICTION OF LIVER CARCINOGENICITY BASED ON TIME COURSE GENE EXPRESSION PROFILES FROM A SHORT TERM ANIMAL STUDY   Zhenqiang Su et al. COMPARISON OF NEXT-GENERATION SEQUENCING (NGS) AND MICROARRAYS FOR A RAT TOXICOGENOMICS STUDY   Youping Deng, Zhichao Liu, Zhenqiang Su PANEL ON TOXICITY: SPEAKERS ADDRESS AUDIENCE QUESTIONS ON BROADER IMPLICATIONS	BLAST Workshop   Jeffrey Cook
	2:30 PM	-	3:25 PM		Networks   Session Chair Dennis Burian, FAA   Jun Huan, NON-STATIONARY DYNAMIC BAYESIAN NETWORK AND ITS APPLICATION IN MICROARRAY DATA ANALYSIS   Radhakrishnan Nagarajan and Meenakshi Upreti, ON GRANGER CAUSALITY AND GENE NETWORKS   Chaoyang Zhang et al. INFERRING GENE REGULATORY NETWORKS USING TIME SERIES GENE EXPRESSION DATA   Jun Huan, Radhakrishnan Nagarajan, Chaoyang Zhang PANEL ON NETWORKS: SPEAKERS ADDRESS AUDIENCE QUESTIONS ON BROADER IMPLICATIONS	Data Driven Methods   Session Chair Richard Segall, ASU   Minho Chae et al. DATA MINING METHODS FOR CLUSTERING LARGE TWO-WAY DATA TO IDENTIFY LOCAL STRUCTURES AND GLOBAL PATTERNS   Joshua Kwekel et al. AGE- AND SEX-RELATED DIFFERENCES IN HEPATIC GENE EXPRESSION DURING THE RAT LIFE CYCLE   Dazhuo Li and Eric C. Rouchka, BAYESIAN CROSS CLUSTERING FOR MICROARRAY DATA ANALYSIS*   Natarajan Meghanathan et al. A CLUSTERING MODEL FOR ENGLISH LANGUAGE ANXIETY IN NON-NATIVE SPEAKERS
	3:30 PM	-	4:25 PM		Protein Structure   Session Chair Xiuzhen Huang, ASU   Cody Ashby et al. PROTEIN STRUCTURE PREDICTION BASED ON EFFICIENT SEQUENCE-STRUCTURE ALIGNMENT*   Lantao Liu et al. NOVEL SOFTWARE PACKAGE FOR HDX MASS SPECTROMETRY ANALYSIS   Ugur Uzuner et al. STRUCTURE DYNAMICS ANALYSIS OF XYLANASES*   Shaneka Simmons et al. FUNCTIONAL DIVERSITY OF THE UNIVERSAL STRESS PROTEINS OF RHODOPSEUDOMONAS PALUSTRIS*	Tools   Session Chair Dawn Wilkins, UM   Samin Liu and Joshua S. Yan, NOVEL SOFTWARE FOR STATISTICAL ANALYSIS OF REAL-TIME PCR DATA   Hong Fang et al. AN FDA BIOINFORMATICS TOOL, ARRAYTRACK, FOR MOLECULAR CHARACTERIZATION OF BACTERIAL FOOD BORNE PATHOGENS   Michael Berry et al. (presented by Ramin Homayouni) DISCOVERING GENE FUNCTIONAL RELATIONSHIPS USING FAUN (FEATURE ANNOTATION USING NONNEGATIVE MATRIX FACTORIZATION)   Inna Rytsareva et al. INTEGRATION OF DIYA OUTPUT WITH GMOD STANDARDS
	4:30 PM	-	5:30 PM		Physiology   Session Chair Ulisses Braga-Neto, TAMU   Kemal Aydin et al. ANALYSIS OF HEART RATE VARIABILITY USING EMPIRICAL MODE DECOMPOSITION   Halil Bisgin et al. DIAGNOSIS OF LQT SYNDROME VIA SUPPORT VECTOR CLASSIFICATION   William O. Griffin et al. AN ARTIFICIAL NEURAL NETWORK INVESTIGATION OF GENETIC AND PHYSIOLOGICAL DATA IN TUBERCULOSIS PATIENTS   Dallas H. Snider et al. CREATING A FEATURE VECTOR FOR MACHINE LEARNING ON FETAL MAGNETOCARDIOGRAM DATA*	Genomes, Promoters, ...   Session Chair Dennis Burian, FAA   Marko Djordjevic, A GENOME-WIDE ANALYSIS OF POISED PROMOTERS IN BACTERIA   Cyriac Kandoth et al. FAST AUTOMATED IDENTIFICATION OF FUNCTIONALLY SIGNIFICANT INVERTED REPEATS IN WHOLE GENOMES*   Aleksandra Markovets et al. PROMOTER PREDICTION IN HALOTHIOBACILLUS NEAPOLITANUS C2 BASED ON STRESS-INDUCED DNA DUPLEX DESTABILIZATION   Juliet D. Tang et al. ASSEMBLING A NOVEL FUNGAL GENOME FROM SHORT READ SEQUENCING DATA*
	6:00 PM	-	9:00 PM		General Sessions
	6:00 PM	-	6:55 PM		Keynote   Elaine Ostrander, Ph.D. Hunting for Genes and Tracking Mutations: Mapping Complex Traits in the Domestic Dog
	7:00 PM				Dinner begins
	7:35 PM				Dinner continues	Introduction to MCBIOS 2011   Ulisses Braga-Neto
	7:45 PM	-	8:10 PM			Dinner Speaker   Scott Jackson ([email protected]) EXPLORING THE GLOBAL GENOMIC LANDSCAPE OF ENTERIC PATHOGENS: GENES, INDELS, SNPS-N-CHIPS (joint work with Isha R. Patel, Mark K. Mammel, and Joseph E. leClerc)
	8:10 PM	-	9:00 PM		Speed Networking Event   Organized by Raphael Isokpehi and students from Jackson State University.
Saturday, February 20, 2010
	8:00 AM	-	8:50 AM		Breakfast Business Meeting (Board Members Only)
	9:00 PM	-	3:30 PM		General Sessions
	9:00 AM	-	9:55 AM		Keynote   Robert Cottingham, Ph.D.
	10:00 AM	-	10:50 AM		Poster Session I
	11:00 AM	-	11:55 AM		Poster Session II
	12:00 PM				Lunch begins
	12:40 PM	-	1:00 PM		Lunch continues	Lunch Speaker   Daniel Berleant, Outgoing MCBIOS President CAN AN ENTIRE CONFERENCE COLLABORATE ON ONE RESEARCH PROJECT?
	1:00 PM	-	2:00 PM		Informal Networking and Poster Discussion (Authors not present)	Arkansas Biosciences Institute Tour   (Optional) Walking tour for up to 4 simultaneous groups of 10-15 people each. Leave at 1 PM return by 2 PM.
	2:05 PM	-	3:00 PM		Poster Session III
	3:00 PM	-	Concluded		Award Ceremony   Andy Perkins, Greg Monaco, Daniel Berleant

 

Officers President Past-President President-Elect Treasurer Secretary Daniel Berleant Dawn Wilkins Ulisses Braga-Neto Dennis Burian Doris Kupfer [email protected] [email protected] [email protected] [email protected] [email protected] Other Organizing Committee Members Local arrangements chair Local arrangements co-chair Poster chair Networking chair Richard Segall Jeffrey Cook Andy Perkins Raphael Isokpehi [email protected] [email protected] [email protected] [email protected]   Download the program (.doc, 2148kb).

Other Board Members Susan Bridges Youping Deng James C. Fuscoe Steve Jennings (ex officio) William Slikker (ex officio) Stephen Winters-Hilt (ex officio) Jonathan Wren (ex officio) Mississippi State University of Southern Mississippi National Center for Toxicological Research University of Arkansas at Little Rock National Center for Toxicological Research University of New Orleans Oklahoma Medical Research Foundation

 

Sponsors

MCBIOS 2010 is grateful to our sponsors and supporters, including:

The Great Plains Network